miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|113180310|gb|EE611156.1|EE611156 GAATGGAGCAGTTTTCTCTCCACCCAACCACCTTCCTCCAATCATCATCATCATCATCATCTTCTTTAACCTCTCAGAAA
CAACACACAGTGAAGGGAACTAGTGTGTGTAAACCAGTGTGTAGATTACCAAACTACCCTCCACATATCTCCAAGAGAAG
TCTATCCGTAAACCTTACTTCACTTTTCTTGTTGTCCTTAACTGGAAATGCCAATGCTGCCATTTTAGAGGCTGATGATG
ATTTGGAACTCCTGGAGAAAGTGAAGCAAGATAGAAAGAAAAGGATTGAAAAACAAACTGTTCTGAATTCAGCCAACAAA
GACAAAGAATATCTACAAGATGTTATTTACAAGCTTAGCAAAGTAGGCCAAGCTATAGAGAACAATGATCTACCTTCAGC
TGGTTCCATCCTAGGTCAAACTGATGCTGACTGGCTCAAGAAGGCTAATGCAGCCCTCTCACAGTTGAGTTCGAGCCCTG
AAGAAAAGGCCGAAGTGGATACATTCAACTCGTCGTTGACTTCTTTGTATTCGTCGGTGACAAAGAATGACATAGAAGGA
TCANAATCAGCTTTTGTGGACTCAGCAAGTGCATTTGAGAAGTGGACAACGTTGACTGGTTTAACTGGTCAACTTANAGG
CCTTTGAGCNAAGTTGTAATTGTAATTTATAGTTCTTTTGATTTTACAAATTAAGGTCTATATGAACAGCAATTTGCTTG
CATGAACCCATATTTNACTATTTTTTTCTAATAAATTTAATTGCCGGA




Most similar to sp|O22773|TL16_ARATH

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O22773|TL16_ARATH Thylakoid lumenal 16.5 kDa protein,
           chloroplastic OS=Arabidopsis thaliana GN=At4g02530 PE=1
           SV=3
          Length = 216

 Score =  144 bits (363), Expect = 7e-34
 Identities = 82/159 (51%), Positives = 101/159 (63%), Gaps = 8/159 (5%)
 Frame = +3

Query: 153 KRSLSVN-LTSLFLLSLTGN------ANXXXXXXXXXXXXXXKVKQDRKKRIEKQTVLNS 311
           +R LS+  ++SL  + L  N      AN              KVKQDRKKRIE+Q VLNS
Sbjct: 45  RRELSLGFMSSLVAIGLVSNDRRRHDANAAILEADDDEELLEKVKQDRKKRIERQAVLNS 104

Query: 312 ANKDKEYLQDVIYKLSKVGQAIENNDLPSAGSILGQ-TDADWLKKANAALSQLSSSPEEK 488
           A K+K YLQD++YKLSKVGQAIENNDLP+AG +LG+  D +W+K  N A ++LS+SPEE 
Sbjct: 105 AVKEKGYLQDLVYKLSKVGQAIENNDLPAAGLVLGKGIDTEWVKTVNLAFTKLSTSPEEN 164

Query: 489 AEVDTFNSSLTSLYSSVTKNDIEGXXXXXXXXXXXXEKW 605
            EV+ FNSSL SL +SV KNDIE             EKW
Sbjct: 165 TEVEAFNSSLASLITSVNKNDIESSKLAFVSSAGAFEKW 203